Compare mRNA Expression Across Analyses

Select saved scRNA-seq analyses, choose shared cell subtype metadata, then compare one or many mRNA genes in the same matched population.

1 Select analyses

Use saved sessions or claimed UUIDs with available .h5ad outputs.

2 Align metadata

Choose a subtype field, then compare all subtype values present in any selected analysis, only shared values, or one specific subtype.

3 Compare mRNA

Generate combined and per-gene plots, then keep the result in history.

0 analyses selected Metadata pending Genes pending Subtype pending
Comparison plan Select at least two analyses

Compare shared mRNA genes only after runs, metadata and subtype scope are clear.

mRNA set No genes Search, select or paste shared gene symbols.
Output Together Combined plot is selected by default.
1

Analyses

Keep at least two analyses selected, even while filtering the list.

Loading analyses...
2

Shared signal

Metadata columns are intersected across selected analyses.

Select analyses to load shared metadata.
Select analyses to load shared genes.
3

Matched subtype

The first dropdown option includes every subtype value present in any selected analysis, including values that appear in only one run.

Default scope All subtypes present Selected Union across selected analyses, including values found in only one run.
Default: All subtypes present compares every subtype value found in any selected analysis. Load subtype options to inspect shared values or one specific subtype.
Plot view
Loading saved analyses for comparison...

Saved Comparisons

Reopen previous comparisons from this account without rerunning the setup.

Loading saved comparisons Checking this workspace for reusable comparison results.